RDAVIDWebService email registration

WSDL-based programming interface for the DAVID Bioinformatic Resources

RDAVIDWebService email registration

Postby Guest » Thu Sep 26, 2013 10:02 am

Hi,
I registered my email on the website, which then tells me to authenticate via my email address.
Then I tried to do this in R :

david<-DAVIDWebService$new("my.email@inst.com")
(of course with my real email)
and then I get:
> david
DAVIDWebService object to access DAVID's website.
User email: NOT REGISTERED YET!!!

What am I missing?
Thanks!
max
Guest
 

Re: RDAVIDWebService email registration

Postby Guest » Thu Sep 26, 2013 11:52 am

There are two possibilities: 1. The sever was down,
2. Problem with the R-package that you use. Try to find answers from the following website:
http://www.bioconductor.org/packages/2.13/bioc/html/RDAVIDWebService.html
Guest
 

Re: RDAVIDWebService email registration

Postby Guest » Mon Sep 30, 2013 3:17 am

just if anybody else wonders. The trick was to explicitly say:
connect(david)

best
m
Guest
 

Re: RDAVIDWebService email registration

Postby Guest » Thu Nov 07, 2013 11:36 am

I still have the problem, even with connect(david). Is the server down today ?
Guest
 

Re: RDAVIDWebService email registration

Postby Guest » Sat Nov 09, 2013 8:59 am

Try DAVIDWebService$new(email = ‘yourEmail@yourEmail.org’)
Guest
 

Re: RDAVIDWebService email registration

Postby Guest » Sun Nov 10, 2013 9:31 am

Greetings

Thanks for your interest in RDAVIDWebService. My apologies for the mistake present on the vignette. Please notice the "email" name parameter on the following code:

#Option 1:
library("RDAVIDWebService")
david<-DAVIDWebService$new(email="your@email")
david

#Option 2:
library("RDAVIDWebService")
david<-DAVIDWebService$new()
setEmail(david, "your@email")
connect(david)
david

Let me know if this solve your problem.
Regards

Cristobal Frenso
PhD scholar @ BDMG - Catholic Univ. of Cordoba - Argentina
www.bdmg.com.ar
Guest
 

Re: RDAVIDWebService email registration

Postby Guest » Tue Nov 19, 2013 10:02 am

Thanks Cristobal Frenso for your package and above clarification. It works.
Guest
 

Re: RDAVIDWebService email registration

Postby Guest » Mon Dec 30, 2013 10:08 am

It looks as though the WebService is down or having problems.

[INFO] Unable to sendViaPost to url[http://david.abcc.ncifcrf.gov/webservice/services/DAVIDWebService.DAVIDWebServiceHttpSoap12Endpoint/]
org.apache.axis2.AxisFault: Transport error: 404 Error: Not Found

Is this already known, and is there any estimate when the WebService will be back?

Thanks,
-Brian
Guest
 

Re: RDAVIDWebService email registration

Postby Guest » Mon Dec 30, 2013 2:34 pm

Just wanted to confirm that there error is not isolated. Also getting the message "Error in .jcall(stub, "S", "authenticate", email) :
org.apache.axis2.AxisFault: Transport error: 404 Error: Not Found" when using RDAVIDWebService
Guest
 

Re: RDAVIDWebService email registration

Postby david » Wed Jan 01, 2014 11:04 pm

We apologize for any inconvenience. The service has been restarted.

DAVID Team
david
Site Admin
 
Posts: 1133
Joined: Wed Mar 08, 2006 10:27 am

Re: RDAVIDWebService email registration

Postby Guest » Thu Jan 09, 2014 1:34 am

Hi,
When I using 「RDAVIDWebService」, I getting the message 「Error in .jcall(stub, "S", "authenticate", email) : org.apache.axis2.AxisFault: First Element must contain the local name, Envelope , but found html」
What am I doing wrong?

Thanks.
Ken
Guest
 

Re: RDAVIDWebService email registration

Postby Guest » Thu Jan 09, 2014 5:21 am

The service has been restarted. Try again.
Guest
 

Re: RDAVIDWebService email registration

Postby Guest » Sun Feb 02, 2014 5:08 pm

I'm running into more issues with the R interface.

[INFO] Unable to sendViaPost to url[http://david.abcc.ncifcrf.gov/webservice/services/DAVIDWebService.DAVIDWebServiceHttpSoap12Endpoint/]
org.apache.axis2.AxisFault: Transport error: 404 Error: Not Found

It seems like the RDavid interface is flaky. Is there a way to make it more robust?

Thanks,
-Brian
Guest
 

Re: RDAVIDWebService email registration

Postby Guest » Wed Mar 05, 2014 10:55 am

My email address has been registered for some time.

Yesterday
david <- DAVIDWebService$new(email = my.email)
was working.

Today I get the following error message:

Error: is.connected() is not TRUE
In addition: Warning message:
In connect() :
Failed. For user registration, go to http://david.abcc.ncifcrf.gov/webservice/register.htm

Does some service need to be re-started?

Thanks.
-Ben
Guest
 

Re: RDAVIDWebService email registration

Postby Guest » Wed Sep 02, 2015 5:52 am

..the problem is that now you need to use https instead of http.
You can use the new version (development 1.7) of the RDAVIDWebService package with new(email, url),
HOWEVER there is a problem with the certificate authentication, so is still not working.
Guest
 

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